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REVDEP: Recheck with 9 revep packages [ci skip]

feature/c
Henrik Bengtsson 3 months ago
parent
commit
2f9a8e67b9
  1. 24
      R/aperm.R
  2. 20
      man/aperm.listenv.Rd
  3. 23
      revdep/README.md
  4. 7
      revdep/cran.md
  5. 43
      revdep/problems.md

24
R/aperm.R

@ -1,6 +1,11 @@
#' Transpose a 'listenv' array by permuting its dimensions
#'
#' @param a (listenv) The list environment to be transposed
#' @usage
#' \method{aperm}{listenv}(a, perm, ...)
#'
#' \method{t}{listenv}(x)
#'
#' @param a,x (listenv) The list environment to be transposed
#'
#' @param perm (integer vector) An index vector of length `dim(a)`
#'
@ -9,8 +14,21 @@
#' @return Returns a list environment with permuted dimensions
#'
#' @seealso
#' This works [base::aperm()].
#' These functions works like [base::aperm()] and [base::t()].
#'
#' @examples
#' x <- as.listenv(1:6)
#' dim(x) <- c(2, 3)
#' dimnames(x) <- list(letters[1:2], LETTERS[1:3])
#' print(x)
#'
#' x <- t(x)
#' print(x)
#'
#' x <- aperm(x, perm = 2:1)
#' print(x)
#'
#' @aliases t.listenv
#' @export
aperm.listenv <- function(a, perm, ...) {
dim <- dim(a)
@ -51,8 +69,6 @@ aperm.listenv <- function(a, perm, ...) {
a
}
#' @rdname aperm
#' @export
t.listenv <- function(x) {

20
man/aperm.listenv.Rd

@ -2,12 +2,15 @@
% Please edit documentation in R/aperm.R
\name{aperm.listenv}
\alias{aperm.listenv}
\alias{t.listenv}
\title{Transpose a 'listenv' array by permuting its dimensions}
\usage{
\method{aperm}{listenv}(a, perm, ...)
\method{t}{listenv}(x)
}
\arguments{
\item{a}{(listenv) The list environment to be transposed}
\item{a, x}{(listenv) The list environment to be transposed}
\item{perm}{(integer vector) An index vector of length \code{dim(a)}}
@ -18,7 +21,20 @@ Returns a list environment with permuted dimensions
}
\description{
Transpose a 'listenv' array by permuting its dimensions
}
\examples{
x <- as.listenv(1:6)
dim(x) <- c(2, 3)
dimnames(x) <- list(letters[1:2], LETTERS[1:3])
print(x)
x <- t(x)
print(x)
x <- aperm(x, perm = 2:1)
print(x)
}
\seealso{
This works \code{\link[base:aperm]{base::aperm()}}.
These functions works like \code{\link[base:aperm]{base::aperm()}} and \code{\link[base:t]{base::t()}}.
}

23
revdep/README.md

@ -2,15 +2,15 @@
|field |value |
|:--------|:----------------------------|
|version |R version 4.0.2 (2020-06-22) |
|os |Ubuntu 18.04.4 LTS |
|version |R version 4.0.3 (2020-10-10) |
|os |Ubuntu 18.04.5 LTS |
|system |x86_64, linux-gnu |
|ui |X11 |
|language |en |
|collate |en_US.UTF-8 |
|ctype |en_US.UTF-8 |
|tz |America/Los_Angeles |
|date |2020-08-16 |
|date |2021-02-14 |
# Dependencies
@ -20,20 +20,17 @@
# Revdeps
## All (12)
## All (9)
|package |version |error |warning |note |
|:-----------------------------------------------|:-------|:-----|:-------|:----|
|[aroma.affymetrix](problems.md#aromaaffymetrix) |3.2.0 | | |1 |
|[aroma.core](problems.md#aromacore) |3.2.1 | | |1 |
|furrr |0.1.0 | | | |
|future |1.18.0 | | | |
|future.apply |1.6.0 | | | |
|future.BatchJobs |0.16.2 | | | |
|future.batchtools |0.9.0 | | | |
|future.callr |0.5.0 | | | |
|ItemResponseTrees |0.2.5 | | | |
|[aroma.core](problems.md#aromacore) |3.2.2 | | |1 |
|furrr |0.2.2 | | | |
|future |1.21.0 | | | |
|future.apply |1.7.0 | | | |
|future.batchtools |0.10.0 | | | |
|future.callr |0.6.0 | | | |
|[origami](problems.md#origami) |1.0.3 | | |1 |
|[PCRedux](problems.md#pcredux) |1.0-6 | | |1 |
|PSCBS |0.65.0 | | | |

7
revdep/cran.md

@ -0,0 +1,7 @@
## revdepcheck results
We checked 9 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
* We saw 0 new problems
* We failed to check 0 packages

43
revdep/problems.md

@ -3,11 +3,10 @@
<details>
* Version: 3.2.0
* GitHub: https://github.com/HenrikBengtsson/aroma.affymetrix
* Source code: https://github.com/cran/aroma.affymetrix
* URL: https://www.aroma-project.org/, https://github.com/HenrikBengtsson/aroma.affymetrix
* BugReports: https://github.com/HenrikBengtsson/aroma.affymetrix/issues
* Date/Publication: 2019-06-23 06:00:14 UTC
* Number of recursive dependencies: 70
* Number of recursive dependencies: 74
Run `revdep_details(, "aroma.affymetrix")` for more info
@ -28,12 +27,11 @@ Run `revdep_details(, "aroma.affymetrix")` for more info
<details>
* Version: 3.2.1
* Version: 3.2.2
* GitHub: https://github.com/HenrikBengtsson/aroma.core
* Source code: https://github.com/cran/aroma.core
* URL: https://github.com/HenrikBengtsson/aroma.core, https://www.aroma-project.org/
* BugReports: https://github.com/HenrikBengtsson/aroma.core/issues
* Date/Publication: 2020-02-04 15:20:21 UTC
* Number of recursive dependencies: 46
* Date/Publication: 2021-01-05 05:10:12 UTC
* Number of recursive dependencies: 47
Run `revdep_details(, "aroma.core")` for more info
@ -44,7 +42,7 @@ Run `revdep_details(, "aroma.core")` for more info
* checking package dependencies ... NOTE
```
Packages suggested but not available for checking:
'sfit', 'expectile', 'HaarSeg', 'mpcbs'
'expectile', 'HaarSeg', 'mpcbs'
```
# origami
@ -52,11 +50,10 @@ Run `revdep_details(, "aroma.core")` for more info
<details>
* Version: 1.0.3
* GitHub: https://github.com/tlverse/origami
* Source code: https://github.com/cran/origami
* URL: https://tlverse.org/origami
* BugReports: https://github.com/tlverse/origami/issues
* Date/Publication: 2020-01-16 22:40:02 UTC
* Number of recursive dependencies: 82
* Number of recursive dependencies: 86
Run `revdep_details(, "origami")` for more info
@ -69,25 +66,3 @@ Run `revdep_details(, "origami")` for more info
Package unavailable to check Rd xrefs: ‘glmnet’
```
# PCRedux
<details>
* Version: 1.0-6
* Source code: https://github.com/cran/PCRedux
* URL: https://CRAN.R-project.org/package=PCRedux
* BugReports: https://github.com/PCRuniversum/PCRedux/issues
* Date/Publication: 2020-03-06 08:10:02 UTC
* Number of recursive dependencies: 117
Run `revdep_details(, "PCRedux")` for more info
</details>
## In both
* checking package dependencies ... NOTE
```
Package suggested but not available for checking: ‘FFTrees’
```
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